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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015792138.1_cds_XP_016510851.1_2291
CDS Infomation

[gene=LOC107828105] [db_xref=GeneID:107828105] [protein=probable inactive ATP-dependent zinc metalloprotease FTSHI 2, chloroplastic] [partial=3'] [exception=annotated by transcript or proteomic data] [protein_id=XP_016510851.1] [location=complement(join(<187..265,628..713,3294..3452,3973..4113,4276..4440,4532..4633,4989..5299,5499..5529,5811..6584))] [gbkey=CDS]
Sequence

ATGGCCTGTAAATGCATTCTCAATTCTCAATTTTTGCCTTCCTTTTCCCAATTTAACAAG
CCCTACTGTCGAAAAAATAGAACTCCGTTAATCATTTCATGCAGTTCTGACAGTCCCACA
ACCGAAGAAGACAAGAAACTTAGGTTTAATCAACTGGGTTTACTTAATCTTTCAGTTACG
CTCACTGTACTTTCAACTTCACTTGTAAGACCCGCAAATGCAGCAAAAGTCTCCGAAAAG
AGACGTTCGACGAAAAAGACTGAGGCTTTAACGCCACAAGAGCTGAAAAAATGGTCACAA
GGACTTCCAACTGTGAGCAACAGGCTGCCTTATACAGAAATATTGGATTTGAAAAGGGAA
GGGAAACTTAAGCATATAATTAAACCACCTAATGTAGGGTTAAAGCAACGGCCCGAGGTA
GTTTTAGCTGTTTTAGAGGATTCTAAGGTTGTTAGAATTGTGTTACCTTCTGTTGAGAGT
GATCCAAGATTTTGGTCTGAATGGGATGACCTGAAAATTGATGGACTTTGTATGAATGCC
TATACTCCACCACTGAAAAAACCCGAGCTGCCTTCACCTTATTTGGGGTTCTTGTCAAAT
ATTCCAGCTTGGATGCTTTCTTTTATGAAGGCCAAGCCACAGTCGAAAAAGGCGTTGGAG
CTGAAGAGGGTGAGAGAAGAATTGAAGAGGAGGCAAAACCATGAGATGTCAAAGATGAGG
GAGGAGAGGGAGAGGATGGAGAAGGCAATGAAAACACAGAAGAAAANTTCTTTATATAAC
ATTAATAAGTTTGATATCTGTTTCTATTTACTATGCACCTGTCTGTTTCACTTCATTGAT
GATTCCTCAGTTTTTTTTTTTCCATTCCTTGTTTGGCACATTAGCCTGGTATTGCTTTAT
TCTTGTCTTATATCGTTACATATCTATTGGGCAATGCTTTCAGGGGGTATACTGCTTTGT
GGTCCACCTGGGGTGGGGAAGACTTTGCTAGCAAAGGCTGTGGCTGGTGAGGCAGGGGTG
AACTTCTTCTCCATTTCGGCATCTCAGTTTGTTGAGATATATGTTGGTGTTGGTGCTTCT
CGTGTTCGAGCACTCTACCAAGAGGCAAGGGAGAATGCACCATCAGTGGTCTTCATTGAT
GAGTTGGATGCGGTTGGCAGAGAACGTGGTTTGATCAAGGGTTCGGGTGGACAAGAACGT
GATGCGACTTTGAATCAGCTTCTTGTGTGCTTGGATGGTTTTGAAGGCAAAGGTGAAGTC
ATCACTATTGCTTCTACAAATAGACCAGACATATTGGACCCAGCACTTGTTCGACCAGGG
CGGTTTGATCGGAAGATATACATACCAAAACCTGGCCTTATTGGGCGAATTGAAATTCTT
AAGGTGCACGCTCGTAAGAAGCCTATGGCTCCTGATTTGGACTATATGGCTGTTGCCAGT
ATGACTGATGGAATGGTTGGTGCAGAGTTGGCCAACATTGTTGAGGTTGCCGCTATTAAT
ATGATGCGTGATGGAAGACCTGAGATTACAACTGATGACTTGTTACAAGCTGCACAAATT
GAAGAACGAGGAATGCTTGACCGGAAGGAGAGGAGCCCTGAAATGTGGAAGCAAGTCGCT
ATTAATGAAGCAGCGATGGCTGTGGTGGCAGTGAACTTCCCAGATCTTAGAAATATTGAG
TTTGTCACTATTGCTCCAAGGGCTGGCAGGGAGCTTGGTTATGTGCGGATGAAAATGGAT
CATGTCAAATTTAAGGAAGGAATGCTGAGCCGACAGTCACTCTTGGATCACATCACTGTT
CAGCTAGCACCACGTGCTGCTGATGAGCTGTGGTATGGAAAGGACCAG

Peptide Sequence

PEP ID

XP_016510851.1
PEP Infomation

PREDICTED: probable inactive ATP-dependent zinc metalloprotease FTSHI 2, chloroplastic [Nicotiana tabacum]
Sequence

MACKCILNSQFLPSFSQFNKPYCRKNRTPLIISCSSDSPTTEEDKKLRFNQLGLLNLSVT
LTVLSTSLVRPANAAKVSEKRRSTKKTEALTPQELKKWSQGLPTVSNRLPYTEILDLKRE
GKLKHIIKPPNVGLKQRPEVVLAVLEDSKVVRIVLPSVESDPRFWSEWDDLKIDGLCMNA
YTPPLKKPELPSPYLGFLSNIPAWMLSFMKAKPQSKKALELKRVREELKRRQNHEMSKMR
EERERMEKAMKTQKKXSLYNINKFDICFYLLCTCLFHFIDDSSVFFFPFLVWHISLVLLY
SCLISLHIYWAMLSGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGAS
RVRALYQEARENAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGKGEV
ITIASTNRPDILDPALVRPGRFDRKIYIPKPGLIGRIEILKVHARKKPMAPDLDYMAVAS
MTDGMVGAELANIVEVAAINMMRDGRPEITTDDLLQAAQIEERGMLDRKERSPEMWKQVA
INEAAMAVVAVNFPDLRNIEFVTIAPRAGRELGYVRMKMDHVKFKEGMLSRQSLLDHITV
QLAPRAADELWYGKDQLSTIWAETADNARSAARTLVLGGLSEKHYGLSSFWVADRINDID
SEALRILHKCYGRAKEVSVDSFPAPLV

Transcript Sequence

Gene sequence data has not been registered.